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TiddlyWiki - a non-linear personal web notebook
MediaWiki - MediaWiki is a free software wiki package written in PHP, originally for use on Wikipedia.
Personaldb - Note taking with non-linear power
Roam Research - A note-taking tool for networked thought
Confluence - Confluence is content collaboration software that changes how modern teams work
Sublime Text - Sublime Text is a sophisticated text editor for code, html and prose - any kind of text file. You'll love the slick user interface and extraordinary features. Fully customizable with macros, and syntax highlighting for most major languages.