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Commit Together by Github might be a bit more popular than Manuskript. We know about 1 link to it since March 2021 and only 1 link to Manuskript. We are tracking product recommendations and mentions on various public social media platforms and blogs. They can help you identify which product is more popular and what people think of it.
Looks like you want something that integrates well with your workflow. The closest to your description seems to be Manuskript although I haven't used it. But your requirement of "keeping notes and frameworks and linking back and forth" should be possible by stitching together existing Linux tools using a syntax like markdown or asciidoc so that you can use any text editor to write your story and use external tools... Source: over 2 years ago
There is "Co-authored-by" which is supported on GitHub [1] and seems appropriate if the maintainer is basing the solution on someone's code. [1] https://github.blog/2018-01-29-commit-together-with-co-authors/. - Source: Hacker News / about 2 years ago
Scrivener - Scrivener is a content-generation tool for composing and structuring documents.
CommitTasks - A small CLI tool that combines git commit and todo list 🛠📝
yWriter - Free writing software designed by the author of the Hal Spacejock and Hal Junior series. yWriter6 helps you write a book by organising chapters, scenes, characters and locations in an easy-to-use interface.
Refined GitHub - Browser extension that makes GitHub cleaner & more powerful
StoryMill - Developers and publishers of Mac, Win, and iOS productivity, home and office and writing software such as MacGourmet, Paperless and many more. Based in MN.
Commit Print - Posters of your git history