Chart
Google Charts
Plot Agents
Highcharts
D3.js
CanvasJS
Plotly
Squey
Manuskript
Scrivener
bibisco
yWriter
oStorybook
Novelize
BlankPage
Novlr
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Based on our record, Manuskript seems to be more popular. It has been mentiond 1 time since March 2021. We are tracking product recommendations and mentions on various public social media platforms and blogs. They can help you identify which product is more popular and what people think of it.
Looks like you want something that integrates well with your workflow. The closest to your description seems to be Manuskript although I haven't used it. But your requirement of "keeping notes and frameworks and linking back and forth" should be possible by stitching together existing Linux tools using a syntax like markdown or asciidoc so that you can use any text editor to write your story and use external tools... Source: almost 5 years ago
Google Charts - Interactive charts for browsers and mobile devices.
Scrivener - Scrivener is a content-generation tool for composing and structuring documents.
Plot Agents - Plot Agents - Transform your data into stunning charts instantly. No coding required. Create 200+ types of charts with AI-powered tools.
bibisco - bibisco is a novel writing software.
Highcharts - A charting library written in pure JavaScript, offering an easy way of adding interactive charts to your web site or web application
yWriter - Free writing software designed by the author of the Hal Spacejock and Hal Junior series. yWriter6 helps you write a book by organising chapters, scenes, characters and locations in an easy-to-use interface.