Jmol
Rasmol
pymol
QuteMol
VMD - Visual Molecular Dynamics
Avogadro
Calistry.org
UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular...

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UCSF Chimera
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| Website | cgl.ucsf.edu | objects.to |
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RasMol. 96 likes. RasMol is a computer program written for molecular graphics visualization intended and used mainly to depict and explore biological...
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QuteMol is an open source (GPL), interactive, high quality molecular visualization system.
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VMD - Visual Molecular Dynamics, molecular graphics software for MacOS X, Unix, and Windows
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Avogadro is a free, fantastically easy to use molecule editor.
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