
MolView
Gnome Chemistry Utils
ACD/ChemSketch
ChemDoodle
Avogadro
MedChem Designer
TrueChem
BKchem
Vim Python IDE
MolView
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Edit: I found molview.org which is very close to what I'm looking for. Is there a way to do full equations in the program? That would be more in line with that I'm looking for. Source: over 2 years ago
** Authorโs note: Iโll be trying to upload every 3-5 days, but life can get hectic. Also, chemical names will almost never be used, officially for story reasons. Definitely not because they give me intense flashbacks. DEFINITELY NOT. That being said, any descriptions of chemicals I end up using can be drawn here. Source: almost 3 years ago
The hexagons and pentagons (and sometimes others) are deliberately drawn as regular shapes to make them neater. Sometimes this is physically accurate (benzene rings are true perfect hexagons) while other times it is not (e.g. Cyclic structures with nitrogen atoms will be irregular due to different bond lengths). Here is a cool tool that shows the true 3D structure of a given molecule, which you can draw in... Source: about 3 years ago
Alternatively, if you're interested in a novel/unmodelled molecule, you can generate ideal coordinates using many tools and webservers, either directly from the SMILES/InChi strings (i.e., here) or by drawing the compound out (i.e., here). Or you can of course build it in PyMOL, but that would be last on my personal list. Source: about 3 years ago
In order to draw them, molview.org looks nice. Source: about 3 years ago
Gnome Chemistry Utils - The Gnome Chemistry Utils include six chemistry related programs:
ACD/ChemSketch - ACD/ChemSketch for personal and academic use brings the power of our structure drawing package to your home computer.
ChemDoodle - Chemical drawing and publishing software for desktop, web and mobile. Affordable and used by thousands of scientists around the world. Free trial available for immediate download.
Avogadro - Avogadro is a free, fantastically easy to use molecule editor.
MedChem Designer - Free chemical structure drawing program for Windows. Will also run in Linux using WINE.
TrueChem - TrueChem is software designed specifically to control and automate the management of chemistries, coatings, and wet processes.