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Clustal X - Multiple sequence alignment software.
SnapGene Viewer - SnapGene offers the fastest and easiest way to plan, visualize, and document DNA cloning and PCR. You can easily annotate features and design primers.
UGENE - UGENE is free open-source cross-platform bioinformatics software
Geneious - Geneious combines all the major DNA and protein sequence analysis tools into one revolutionary...
DNADynamo - DNA analysis, cloning and sequencing software
TreeView - Tree drawing software for Apple Macintosh and Windows.