Software Alternatives, Accelerators & Startups

3D Slicer VS Fiji

Compare 3D Slicer VS Fiji and see what are their differences

3D Slicer logo 3D Slicer

Slicer is a community platform created for the purpose of subject specific image analysis and...

Fiji logo Fiji

Fiji: A batteries-included distribution of ImageJ.
  • 3D Slicer Landing page
    Landing page //
    2023-01-26
  • Fiji Landing page
    Landing page //
    2023-04-27

3D Slicer features and specs

  • Open Source
    3D Slicer is open-source software, meaning it's free to use, modify, and distribute, promoting collaboration and sharing within the community.
  • Cross-Platform Compatibility
    It is compatible with Windows, macOS, and Linux, providing flexibility and accessibility to users across different operating systems.
  • Extensive Plugin Support
    3D Slicer supports a wide array of plugins and extensions, allowing users to customize and enhance its functionality to fit specific needs.
  • Advanced Visualization
    The software offers comprehensive tools for 3D visualization, making it suitable for detailed imaging tasks in medical and research fields.
  • Robust Community
    3D Slicer has an active community of users and developers who contribute to its improvement and provide support, fostering an environment for knowledge exchange.

Possible disadvantages of 3D Slicer

  • Steep Learning Curve
    Given its advanced functionalities, new users may find it challenging to learn and effectively use 3D Slicer without substantial time investment.
  • Limited Documentation
    While there are resources available, some users might find the documentation insufficient in covering all aspects or updates of the software.
  • Performance Issues
    On less powerful hardware, users might experience lag or slow performance, particularly when working with large datasets or rendering complex scenes.
  • Complex User Interface
    The interface can be overwhelming for beginners due to the multitude of options and settings available, which may complicate initial use.
  • Occasional Bugs
    As with many open-source projects, users might encounter bugs or glitches, especially in newer features or extensions, requiring troubleshooting.

Fiji features and specs

  • Open Source
    Fiji is open source software, which means it's free to use, modify, and distribute. This encourages collaboration and sharing among researchers and developers.
  • Extensive Plugin Library
    Fiji comes with a vast collection of plugins that extend its functionality for various image analysis tasks, making it versatile for different scientific applications.
  • User Community
    Fiji has a large and active user community, providing a wealth of shared resources, tutorials, and support for troubleshooting issues.
  • Cross-Platform Compatibility
    Fiji is compatible with different operating systems, including Windows, macOS, and Linux, making it accessible to a wide range of users.
  • Integration with Other Tools
    Fiji can integrate with other scientific tools and programming languages (like Python), facilitating advanced analyses and workflow automation.

Possible disadvantages of Fiji

  • Complexity for Beginners
    The extensive features and plugins can be overwhelming for new users, resulting in a steep learning curve for those unfamiliar with image processing.
  • Performance Limitations
    Handling very large datasets or complex analysis may lead to performance issues, as Fiji is a Java-based tool which might not be as fast as other specialized software.
  • Limited Interface Modernity
    The user interface may seem outdated compared to some modern software, which can affect user experience and ease of use.
  • Documentation Variability
    While there is extensive documentation available, the quality and detail can vary significantly, sometimes making it challenging to find specific information.
  • Dependency on Plugins
    Heavy reliance on plugins can lead to compatibility issues or bugs, especially if some plugins are not regularly updated or maintained.

3D Slicer videos

3D Slicer Tutorial

Fiji videos

fiji water (vaporwave drink) review

More videos:

  • Review - Most Incredible Place in FIJI! | Paradise Cove Resort, Yasawa Islands
  • Review - Review: FIJI AIRWAYS Economy Class - PRO-ACTIVE, PASSIONATE & FUN!

Category Popularity

0-100% (relative to 3D Slicer and Fiji)
Graphic Design Software
64 64%
36% 36
Digital Drawing And Painting
Image Editing
68 68%
32% 32
Other Bio Tech
47 47%
53% 53

User comments

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Reviews

These are some of the external sources and on-site user reviews we've used to compare 3D Slicer and Fiji

3D Slicer Reviews

We have no reviews of 3D Slicer yet.
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Fiji Reviews

Top 15 Self-hosted open-source free web-based email clients
Fiji Webmail is an open-soure webmail client for IMAP4 protocol. It includes threaded email display, custom labels, tags and folders, address book manager, calendar and tasks support.
Source: medevel.com

Social recommendations and mentions

Based on our record, Fiji should be more popular than 3D Slicer. It has been mentiond 7 times since March 2021. We are tracking product recommendations and mentions on various public social media platforms and blogs. They can help you identify which product is more popular and what people think of it.

3D Slicer mentions (2)

  • I wanted to join the โ€œI printed my brainโ€ club
    Fun fact: DICOM is a standard medical format and there are a number of free or open source tools (this one's my favorite) that allow you to import virtually any MRI or CT scan data and produce a 3D .STL file from the data. Source: over 2 years ago
  • 3D printed anatomy from a CT scan. Have been doing this for a while now for my patients.with pectus excavatum (sunken chest). Thought I'd also share this here. Tips are welcome!
    Thank you! For those interested, software can be found here. Source: over 2 years ago

Fiji mentions (7)

  • Vintage ImageJ in the Browser
    Fun! ImageJ is incredible and unmatched still! I use it with all the bells with Fiji - https://fiji.sc There's not a computer I don't install it on. - Source: Hacker News / 3 months ago
  • Is there a (free) tool to work with pixel perfect charts and graphs?
    I think you're looking for ImageJ. The "GUI" version is Fiji which I can't recommend enough. I use it to measure distances in photos based on reference objects but I think its origin is from scientific image processing. Source: over 2 years ago
  • Unable to open mvd2 files on Windows Computer
    If you are using the FIJI distribution of ImageJ (https://fiji.sc), then you should be able to drag the .mvd2 file onto the FIJI toolbar, and it will open using the Bioformats Importer. You need to have the .mvd2 file and the Data folder that is associated with it in the same folder. If you don't have that data directory, the .mvd2 file is useless AFAIK. Source: over 3 years ago
  • This is not wearable. 15.5/20โ‰ 0.86
    FWIW, depending on what you need it for, there's a variation called FIJI, which is.. "Fiji is just ImageJ"(but with a bunch of plugins). That is, one-click install to get a ton of commonly used things, though many are aimed at biology. Source: over 3 years ago
  • Does anybody know imageJ and how it works? Sorry i dont know the appropriate community
    FiJi is ImageJ plus a bunch of useful plugins. My favorite is BioFormats, which reads a whole bunch of proprietary image formats from microscope software etc. Easy to download and install, too -- you can get it here: https://fiji.sc/. Source: over 3 years ago
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What are some alternatives?

When comparing 3D Slicer and Fiji, you can also consider the following products

MicroDicom - DICOM viewer. MicroDicom is a free DICOM viewer. Export to the most common picture formats, movie, clipboard. It is equipped with most common tools for manipulation of DICOM images.

ImageJ - and Other Health Care

Horos - A free, open source 64-bit DICOM medical image viewer

Image Pro - Used by researchers worldwide, Image-Pro Plus image processing software makes it easy to acquire images, count, measure and classify objects, and automate work.

AMIDE - AMIDE: a Medical Image Data Analysis Tool

JMicroVision - Image analysis toolbox: measuring and quantifying components of high-definition images