Profiling workflows with the Amazon Genomics CLI

1

jq

Note the WES endpoint Url needs to have “ga4gh/wes/v1” appended to it. We can extract this value using jq.

#CLI #Data Management #Command Line Tools 155 social mentions

2

Bokeh

Now that we can get task timing information in a consistent manner, let’s do some plotting. For this, I’m going to use Bokeh which generates nice interactive plots.

#Charting Libraries #Data Visualization #Data Dashboard 5 social mentions