Top 11 Open-Source Alternatives to Cytoscape

The top open-source alternatives to Cytoscape are Gephi, PlantUML, and draw.io. One of the criteria for ordering this list is the number of mentions that products have on reliable external sources. You can suggest additional sources through the form here.

Gephi Landing Page
1

Gephi

Gephi is an open-source software for visualizing and analyzing large networks graphs.
Pricing:
- Open Source
#Diagrams #Flowcharts #Wireframing 31 social mentions
PlantUML Landing Page
2

PlantUML

PlantUML is an open-source tool that uses simple textual descriptions to draw UML diagrams.
Pricing:
- Open Source
#Flow Charts And Diagrams #Diagrams #UML Diagrams 5 social mentions
draw.io Landing Page
3

draw.io

Online diagramming application
Pricing:
- Open Source
#Diagrams #Flowcharts #Wireframing 714 social mentions
D3.js Landing Page
4

D3.js

D3.js is a JavaScript library for manipulating documents based on data. D3 helps you bring data to life using HTML, SVG, and CSS.
Pricing:
- Open Source
#Javascript UI Libraries #Charting Libraries #Data Visualization 159 social mentions
Matplotlib Landing Page
5

Matplotlib

matplotlib is a python 2D plotting library which produces publication quality figures in a variety...
Pricing:
- Open Source
#Data Visualization #Development #Technical Computing 98 social mentions
Observable Landing Page
6

Observable

Interactive code examples/posts
Pricing:
- Open Source
#Data Visualization #Data Dashboard #Data Science Notebooks 285 social mentions
TikZiT Landing Page
7

TikZiT

TikZiT is a graphical tool for rapidly creating graphs and string diagrams using PGF/TikZ.
Pricing:
- Open Source
#Diagrams #Flow Charts And Diagrams #Flowcharts 12 social mentions
graphia.app
8

Graphia

Graphia is a powerful open source visual analytics application developed to aid the interpretation of large and complex datasets.
Pricing:
- Open Source
#Diagrams #Market Research #Flowcharts 1 social mentions
Penrose Landing Page
9

Penrose

Create beautiful diagrams just by typing notation in plain text.
Pricing:
- Open Source
#Diagrams #Flowcharts #Flow Charts And Diagrams 2 social mentions
C3.js Landing Page
10

C3.js

D3-based reusable chart library that enables deeper integration of charts into web applications
Pricing:
- Open Source
#Diagrams #Flowcharts #Charting Libraries 10 social mentions
Memgraph Landing Page
11

Memgraph

Memgraph is an open source graph database built for real-time streaming and compatible with Neo4j. Whether you're a developer or a data scientist with interconnected data, Memgraph will get you the immediate actionable insights fast.
Pricing:
- Open Source
- Freemium
- Free Trial
#Graph Databases #Databases #Developer Tools 21 social mentions