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Freeplane - Freeplane is a powerful and free software for building mind maps.
Gitscout - A beautiful Github Issues experience for macOS
vym - VYM (View Your Mind) is a tool to generate and manipulate maps which show your thoughts.
Shrink for Github - A macOS app for your Github issues
Linked Ideas - A macOS/iOS apps to treat ideas as links of concepts.
VarCI - The missing assistant For GitHub issues