What are some alternatives?
When comparing MKVExtractGUI and MKVToolnix, you can also consider the following products
Subler - Subler is a Mac OS X application that opens media containers, allows you to add or remove media...
FFmpeg - Open source multimedia suite for conversion, playback, profiling, and streaming.
gMKVExtractGUI - GUI front-end for mkvinfo and mkvextract CLI tools.
HandBrake - HandBrake allows users to easily convert video files into a wide variety of different formats.
MP4Joiner - MP4Joiner is a multi-functional and cross platform application for joining the multiple MP4 music clips.
Boilsoft Video Joiner - Boilsoft Video Joiner is a powerful video merger to join AVI, MPEG, MPG, VOB, RM/RMVB, 3GP, ASF, WMV, WMA, MP4, MP4A, MKV or FLV files, and so forth.