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Based on our record, TiddlyMap should be more popular than Manuskript. It has been mentiond 2 times since March 2021. We are tracking product recommendations and mentions on various public social media platforms and blogs. They can help you identify which product is more popular and what people think of it.
Looks like you want something that integrates well with your workflow. The closest to your description seems to be Manuskript although I haven't used it. But your requirement of "keeping notes and frameworks and linking back and forth" should be possible by stitching together existing Linux tools using a syntax like markdown or asciidoc so that you can use any text editor to write your story and use external tools... Source: over 2 years ago
Here is an example of what a regular Concept Map looks like which shows how two nodes are related https://tiddlymap.org/. Source: 8 months ago
Piggybacking on the above post, there's a TiddlyWiki plugin for maps, which would be really useful for RPGs: http://tiddlymap.org/. Source: over 2 years ago
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