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Freeplane - Freeplane is a powerful and free software for building mind maps.
Gitscout - A beautiful Github Issues experience for macOS
SuperNotecard - Introducing SuperNotecard. SuperNotecard is an online writing tool that features virtual notecards to help arrange facts or scenes, track details, organize paragraphs, and clarify your composition process.
GitHub Reader - A quick way to browse GitHub issues and pull requests.
vym - VYM (View Your Mind) is a tool to generate and manipulate maps which show your thoughts.
Codetree - You can manage your entire development process through GitHub.