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TiddlyWiki - a non-linear personal web notebook
wikidPad - wikidPad is an application for storing thoughts, ideas, todo lists, contacts, or anything else that user can think of to write down.
Ultra Recall - "Ultra Recall is personal information, knowledge, and document organizer software for...
Wiki on a Stick - Self-contained desktop wiki
Zim Wiki - Zim is a graphical text editor used to maintain a collection of wiki pages. Each page can contain links to other pages, simple formatting and images.
TheBrain - TheBrain: The Ultimate Digital Memory