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B4R - Development tool for native Arduino programs.
avrdude-gui - a GUI Interface for the popular avrdude program.
Circuito.io - Instant code and wiring for your project
AVRDUDESS - AVRDUDESS is a GUI for AVRDUDE, a tool for programming Atmel microcontrollers.
embedXcode - embedXcode is a template for Xcode.
BitBurner - BitBurner AVR Programmer, a full and complete AVRdude GUI for Windows.