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Freeplane - Freeplane is a powerful and free software for building mind maps.
Scapple - Scapple is an easy-to-use tool for getting ideas down as quickly as possible and making connections...
Linked Ideas - A macOS/iOS apps to treat ideas as links of concepts.
Xmind - Xmind is a brainstorming and mind mapping application.
SuperNotecard - Introducing SuperNotecard. SuperNotecard is an online writing tool that features virtual notecards to help arrange facts or scenes, track details, organize paragraphs, and clarify your composition process.
Visual Understanding Environment - Visual Understanding Environment (VUE) is a mind-mapping and concept-mapping tool.