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LucidChart - LucidChart is the missing link in online productivity suites. LucidChart allows users to create, collaborate on, and publish attractive flowcharts and other diagrams from a web browser.
SuperNotecard - Introducing SuperNotecard. SuperNotecard is an online writing tool that features virtual notecards to help arrange facts or scenes, track details, organize paragraphs, and clarify your composition process.
draw.io - Online diagramming application
vym - VYM (View Your Mind) is a tool to generate and manipulate maps which show your thoughts.
PlantUML - PlantUML is an open-source tool that uses simple textual descriptions to draw UML diagrams.
Freeplane - Freeplane is a powerful and free software for building mind maps.