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Taskwarrior - Taskwarrior is an ambitious project bringing sophisticated capabilities to a simple and elegant...
Todoist - Todoist is a to-do list that helps you get organized, at work and in life.
Taskbook - Like Trello but for the Terminal
Mendeley - Easily organize your papers, read & annotate your PDFs, collaborate in private or open groups, and securely access your research from everywhere.
dstask - Command line todo list with git sync
Zotero - Zotero is a free, easy-to-use tool to help you collect, organize, cite, and share research.