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Visual Understanding Environment - Visual Understanding Environment (VUE) is a mind-mapping and concept-mapping tool.
Xmind - Xmind is a brainstorming and mind mapping application.
Protégé - Protégé is a free, open source ontology editor and knowledge-base framework.
FreeMind - FreeMind is a premier free mind-mapping software written in Java.
docassemble - docassemble is a free, open-source expert system for guided interviews and document assembly.
yEd - yEd is a free desktop application to quickly create, import, edit, and automatically arrange diagrams. It runs on Windows, Mac OS X, and Unix/Linux.