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Cytoscape - Cytoscape Official Web Site
DataWalk - DataWalk is a software platform to connect numerous large data sets, both external and internal, into a single repository for fast visual analysis.
Gephi - Gephi is an open-source software for visualizing and analyzing large networks graphs.
Lampyre - Lampyre - an efficient data analysis and OSINT multi-tool for everyone.
VOSviewer - VOSviewer is a software tool for constructing and visualizing bibliometric networks.
Maltego - Maltego is an open source intelligence and forensics application.