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vym - VYM (View Your Mind) is a tool to generate and manipulate maps which show your thoughts.
Diagrams for Mac - A diagram editor for visualizing structures and processes
Linked Ideas - A macOS/iOS apps to treat ideas as links of concepts.
Screenshot Flow - Super fast app diagrams to communicate design
Freeplane - Freeplane is a powerful and free software for building mind maps.
Wireflow - Create beautiful flowcharts