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Scapple - Scapple is an easy-to-use tool for getting ideas down as quickly as possible and making connections...
Xmind - Xmind is a brainstorming and mind mapping application.
vym - VYM (View Your Mind) is a tool to generate and manipulate maps which show your thoughts.
Visual Understanding Environment - Visual Understanding Environment (VUE) is a mind-mapping and concept-mapping tool.
FreeMind - FreeMind is a premier free mind-mapping software written in Java.
Linked Ideas - A macOS/iOS apps to treat ideas as links of concepts.