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Natural Docs - Natural Docs is an open-source documentation generator for multiple programming languages.
HelpNDoc - What is HelpNDoc ? Easy to use yet powerful help authoring environment which can generate various documentation formats from a single source.
Doxygen - Generate documentation from source code
HelpSmith - HelpSmith is a help authoring tool to create CHM HTML help files, manuals, and PDF documents.
ROBODoc - Supports C, C++, Fortran, Perl, shell scripts, Assembler, DCL, DB/C, Tcl/Tk, Forth, Lisp, COBOL, Occam, Basic, HTML, Clarion, and any other language that supports remarks.
Adobe RoboHelp - Adobe RoboHelp empowers organizations to deliver engaging help and policy content across mobile devices, formats, and platforms.