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Optimism - Mood Chart software for tracking and maintaining mental health.
vym - VYM (View Your Mind) is a tool to generate and manipulate maps which show your thoughts.
WorryTree - Record, manage and problem solve your worries and anxiety based on CBT techniques
Linked Ideas - A macOS/iOS apps to treat ideas as links of concepts.
Critical Stimulus - Critical Stimulus is a psychoanalytical tool that uncovers repressions, hidden agendas and more.
Freeplane - Freeplane is a powerful and free software for building mind maps.