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PMM - Personal Memory Manager - Personal Memory Manager helps you spin-off from the top: manage your own knowledge and ideas.
draw.io - Online diagramming application
Visual Understanding Environment - Visual Understanding Environment (VUE) is a mind-mapping and concept-mapping tool.
LucidChart - LucidChart is the missing link in online productivity suites. LucidChart allows users to create, collaborate on, and publish attractive flowcharts and other diagrams from a web browser.
Rationale - Rationale let's you create, online, argument maps.
PlantUML - PlantUML is an open-source tool that uses simple textual descriptions to draw UML diagrams.