Manuskript
Scrivener
yWriter
StoryMill
bibisco
oStorybook
Novelize
Novlr
Nulis
Scrivener
bibisco
Gingko
Quoll Writer
ultra_outliner
yWriter
Plume Creator
ManuskriptBased on our record, Nulis should be more popular than Manuskript. It has been mentiond 2 times since March 2021. We are tracking product recommendations and mentions on various public social media platforms and blogs. They can help you identify which product is more popular and what people think of it.
Looks like you want something that integrates well with your workflow. The closest to your description seems to be Manuskript although I haven't used it. But your requirement of "keeping notes and frameworks and linking back and forth" should be possible by stitching together existing Linux tools using a syntax like markdown or asciidoc so that you can use any text editor to write your story and use external tools... Source: over 2 years ago
Another good one: https://nulis.io/. - Source: Hacker News / over 2 years ago
Similar to notebase.io there is and open source program called nulis, I am not sure how actively nulis is developed https://nulis.io/ https://github.com/raymestalez/nulis There is also ginko, ginko chrom extension. Gingko2 desktop and now Ginkowriter…which are different incarnations of the same slide out feature. I believe Nulis was inspired by Ginko. Source: almost 3 years ago
Scrivener - Scrivener is a content-generation tool for composing and structuring documents.
yWriter - Free writing software designed by the author of the Hal Spacejock and Hal Junior series. yWriter6 helps you write a book by organising chapters, scenes, characters and locations in an easy-to-use interface.
bibisco - bibisco is a novel writing software.
StoryMill - Developers and publishers of Mac, Win, and iOS productivity, home and office and writing software such as MacGourmet, Paperless and many more. Based in MN.
Gingko - Write and organize your ideas in Gingko tree documents.
Quoll Writer - Focus on your words not the interface.