Manuskript
Scrivener
StoryMill
yWriter
bibisco
Novelize
BlankPage
oStorybook
Fidus Writer
Overleaf
TeXworks
TeXstudio
Archimedes
WinShell
Latexila
VTEX
Manuskript Fidus WriterBased on our record, Manuskript seems to be more popular. It has been mentiond 1 time since March 2021. We are tracking product recommendations and mentions on various public social media platforms and blogs. They can help you identify which product is more popular and what people think of it.
Looks like you want something that integrates well with your workflow. The closest to your description seems to be Manuskript although I haven't used it. But your requirement of "keeping notes and frameworks and linking back and forth" should be possible by stitching together existing Linux tools using a syntax like markdown or asciidoc so that you can use any text editor to write your story and use external tools... Source: over 2 years ago
Scrivener - Scrivener is a content-generation tool for composing and structuring documents.
Overleaf - The online platform for scientific writing. Overleaf is free: start writing now with one click. No sign-up required. Great on your iPad.
StoryMill - Developers and publishers of Mac, Win, and iOS productivity, home and office and writing software such as MacGourmet, Paperless and many more. Based in MN.
TeXworks - The TeXworks project is an effort to build a simple TeX front-end program (working environment)...
yWriter - Free writing software designed by the author of the Hal Spacejock and Hal Junior series. yWriter6 helps you write a book by organising chapters, scenes, characters and locations in an easy-to-use interface.
TeXstudio - TeXstudio is an integrated environment for writing LaTeX documents.