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Based on our record, LaTeXDraw should be more popular than Manuskript. It has been mentiond 2 times since March 2021. We are tracking product recommendations and mentions on various public social media platforms and blogs. They can help you identify which product is more popular and what people think of it.
For the figures including TeX' annotation, both latexdraw and ipe, the later especially after the discovery of two tutorial videos (Introduction to Ipe drawing editor - Tools, Properties, & Snapping and How to create these figures in Ipe drawing editor). Both programs may be used either in Linux, Mac, Windows. For ipe, I like that the underlying LaTeX source code is embedded in the .pdf, so there is a way to... Source: over 1 year ago
If you are looking for application, then take a look at LaTexDraw. Source: over 1 year ago
Looks like you want something that integrates well with your workflow. The closest to your description seems to be Manuskript although I haven't used it. But your requirement of "keeping notes and frameworks and linking back and forth" should be possible by stitching together existing Linux tools using a syntax like markdown or asciidoc so that you can use any text editor to write your story and use external tools... Source: over 2 years ago
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