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Jira - The #1 software development tool used by agile teams. Jira Software is built for every member of your software team to plan, track, and release great software.
Fossil - Simple, high-reliability, distributed software configuration management
Redmine - Flexible project management web application
Termlets - "1970's style terminal software, for the rest of us."
PlanShell - PlanShell offer a secure, low cost, unlimited project management & issue tracking redmine hosting services
Mercurial SCM - Mercurial is a free, distributed source control management tool.