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Mendeley - Easily organize your papers, read & annotate your PDFs, collaborate in private or open groups, and securely access your research from everywhere.
Agenda - A date-focused note taking app for both planning and documenting your projects.
JabRef - Graphical Java application for managing bibtex (. bib) databases.JabRef · JabRef Help · JabRef | Blog · OpenOffice/LibreOffice .
Notepin - Extremely simple note-taking + blogging ✍️
EndNote - Accelerate Your Research. Save time, stay organized, collaborate with colleagues and get published with EndNote 20.
Bear - Bear.app is a note-taking and content writing app that helps you boost productivity with its intuitive tools.