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DejaGnu - DejaGnu is a framework for testing other programs.
Zotero - Zotero is a free, easy-to-use tool to help you collect, organize, cite, and share research.
Expect - Expect is a tool for automating interactive applications such as telnet, ftp, passwd, fsck, rlogin...
Qiqqa - Qiqqa is a free research and reference management software. It can be used in many organizational projects from the academic to the personal to the business endeavor. Read more about Qiqqa.
Check - Check is a unit testing framework for C, which runs on environments such as GNU/Linux, GNU/Hurd, BSD, and Mac OSX.
JabRef - Graphical Java application for managing bibtex (. bib) databases.JabRef · JabRef Help · JabRef | Blog · OpenOffice/LibreOffice .