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Xmind - Xmind is a brainstorming and mind mapping application.
Zotero - Zotero is a free, easy-to-use tool to help you collect, organize, cite, and share research.
Mindomo - Easy-to-create and share mind maps, concept maps, task maps and outlines. Mind mapping software for Web, Desktop, iOS and Android. Mind map with us for free!
Qiqqa - Qiqqa is a free research and reference management software. It can be used in many organizational projects from the academic to the personal to the business endeavor. Read more about Qiqqa.
Freeplane - Freeplane is a powerful and free software for building mind maps.
JabRef - Graphical Java application for managing bibtex (. bib) databases.JabRef · JabRef Help · JabRef | Blog · OpenOffice/LibreOffice .