Cytoscape
Gephi
Graphviz
KeyLines
UCINET
NodeXL
Pajek
SocNetV
Redis
MongoDB
ArangoDB
Apache Cassandra
PostgreSQL
neo4j
memcached
CouchBase
Redis is an open source (BSD licensed), in-memory data structure store, used as a database, cache and message broker. It supports data structures such as strings, hashes, lists, sets, sorted sets with range queries, bitmaps, hyperloglogs, geospatial indexes with radius queries and streams. Redis has built-in replication, Lua scripting, LRU eviction, transactions and different levels of on-disk persistence, and provides high availability via Redis Sentinel and automatic partitioning with Redis Cluster.
CytoscapeBased on our record, Redis seems to be a lot more popular than Cytoscape. While we know about 183 links to Redis, we've tracked only 11 mentions of Cytoscape. We are tracking product recommendations and mentions on various public social media platforms and blogs. They can help you identify which product is more popular and what people think of it.
Doing a bit more digging, it's using cytoscape[0] which is similar to graphviz. If you search your favorite search engine with "Cytoscape Session Viewer", you'll find many websites displaying the same type of graphs (select layout: circle). FYI, circo doesn't always output a circle. I recently created https://github.com/MegaManSec/SSH-Snake/blob/main/tools/SSH-Snake-dot-circo.png. - Source: Hacker News / 4 months ago
The YAML files are then parsed, and a CYJS file produced, which is a graph model. This is used directly in the web app, but can also be opened in the Cytoscape desktop app , and imported into Neo4j if desired. I can add additional "export" steps to the automated build process, so e.g. GraphML (yEd, Gephi) or DOT files (GraphViz, mermaid, etc) can be used for whatever purpose needed. Source: 12 months ago
Both Cytoscape and Gephi are options that you can try on Windows; both can run some classic community detection algorithms and can be extended with plugins. Personally, I'd recommend you to use igraph, which can be run as an R or python libraries. Then, about the specific algorithm, I have no experience on amino acid communities, but I would approach the issue thinking the properties that you would like to... Source: over 1 year ago
Two common GUI tools for analysis and editing of graph data are Gephi and Cytoscape. An older alternative starting with a P is Pajek, but I've never used it. Source: almost 2 years ago
I've been thinking that Gephi is getting long in the tooth. Has anybody tried Cytoscape? (https://cytoscape.org/) (DNS is SERVFAILing at the moment.) I use it for a combination of "no K" clustering (general exploration) and what's referred to in threat intelligence by the term of art "pivoting". - Source: Hacker News / about 2 years ago
The page 404s for me currently and it does not seem to be archived by the wayback machine either: https://web.archive.org/web/20240000000000*/https://redis.io/news/121. - Source: Hacker News / 23 days ago
Redis - real time data storage with different data structures in a cache. - Source: dev.to / 25 days ago
Redis.io no longer mentions open source. They have still not changed meta description on their page. It still says it is open source ^^ view-source:https://redis.io/. - Source: Hacker News / about 1 month ago
Follow the steps below to install Redis:. - Source: dev.to / about 2 months ago
Redis: An open-source, in-memory data structure store supporting various data types. It offers persistence, replication, and clustering, making it ideal for more complex caching requirements and session storage. - Source: dev.to / 2 months ago
Gephi - Gephi is an open-source software for visualizing and analyzing large networks graphs.
MongoDB - MongoDB (from "humongous") is a scalable, high-performance NoSQL database.
Graphviz - Graphviz is open source graph visualization software. It has several main graph layout programs.
ArangoDB - A distributed open-source database with a flexible data model for documents, graphs, and key-values.
KeyLines - The JavaScript toolkit for graph visualization
Apache Cassandra - The Apache Cassandra database is the right choice when you need scalability and high availability without compromising performance.
