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Based on our record, Cytoscape should be more popular than ArangoDB. It has been mentiond 11 times since March 2021. We are tracking product recommendations and mentions on various public social media platforms and blogs. They can help you identify which product is more popular and what people think of it.
Doing a bit more digging, it's using cytoscape[0] which is similar to graphviz. If you search your favorite search engine with "Cytoscape Session Viewer", you'll find many websites displaying the same type of graphs (select layout: circle). FYI, circo doesn't always output a circle. I recently created https://github.com/MegaManSec/SSH-Snake/blob/main/tools/SSH-Snake-dot-circo.png. - Source: Hacker News / 4 months ago
The YAML files are then parsed, and a CYJS file produced, which is a graph model. This is used directly in the web app, but can also be opened in the Cytoscape desktop app , and imported into Neo4j if desired. I can add additional "export" steps to the automated build process, so e.g. GraphML (yEd, Gephi) or DOT files (GraphViz, mermaid, etc) can be used for whatever purpose needed. Source: 12 months ago
Both Cytoscape and Gephi are options that you can try on Windows; both can run some classic community detection algorithms and can be extended with plugins. Personally, I'd recommend you to use igraph, which can be run as an R or python libraries. Then, about the specific algorithm, I have no experience on amino acid communities, but I would approach the issue thinking the properties that you would like to... Source: over 1 year ago
Two common GUI tools for analysis and editing of graph data are Gephi and Cytoscape. An older alternative starting with a P is Pajek, but I've never used it. Source: almost 2 years ago
I've been thinking that Gephi is getting long in the tooth. Has anybody tried Cytoscape? (https://cytoscape.org/) (DNS is SERVFAILing at the moment.) I use it for a combination of "no K" clustering (general exploration) and what's referred to in threat intelligence by the term of art "pivoting". - Source: Hacker News / about 2 years ago
ArangoDB: A native multi-model database, it offers flexibility for documents, graphs, and key-values. This versatility makes it suitable for applications requiring a combination of these data models. - Source: dev.to / 2 months ago
ArangoDB, a "multi-modal" database engine that stores arbitrary JSON documents like MongoDB, key/value data like Redis, and graph relationships like Neo4j — and lets you leverage all three kinds of data in a single query. Source: over 1 year ago
I have a bash script and a part of it is installation of arangodb.com. I want a script to install Arangodb in such a way a user won't have select any options during installation, not even specify a password. I want it to have all the default settings, default password such as 1234, even an empty password will do, default config... Everything by default and without any questions to a user. Source: about 3 years ago
Gephi - Gephi is an open-source software for visualizing and analyzing large networks graphs.
Redis - Redis is an open source in-memory data structure project implementing a distributed, in-memory key-value database with optional durability.
Graphviz - Graphviz is open source graph visualization software. It has several main graph layout programs.
MongoDB - MongoDB (from "humongous") is a scalable, high-performance NoSQL database.
KeyLines - The JavaScript toolkit for graph visualization
neo4j - Meet Neo4j: The graph database platform powering today's mission-critical enterprise applications, including artificial intelligence, fraud detection and recommendations.