Cytoscape VS Plotly

Plotly

Low-Code Data Apps

Landing page //
2021-07-29

Landing page //
2023-07-31

Cytoscape Tutorial- Beginners Guide in Jupyter

Plotly videos

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Create Real-time Chart with Javascript | Plotly.js Tutorial

Category Popularity

0-100% (relative to Cytoscape and Plotly)

Plotly

Diagrams

100 100%

Diagrams

0% 0

Data Visualization

18 18%

Data Visualization

82% 82

Flowcharts

100 100%

Flowcharts

0% 0

Data Dashboard

0 0%

Data Dashboard

100% 100

User comments

Share your experience with using Cytoscape and Plotly. For example, how are they different and which one is better?

Reviews

These are some of the external sources and on-site user reviews we've used to compare Cytoscape and Plotly

Cytoscape Reviews

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Plotly Reviews

Best 8 Redash Alternatives in 2023 [In Depth Guide]

Plotly is specifically designed for companies who want to build and deploy analytic applications like dashboards using Python, Julia, or R without needing DevOps or Javascript developers.

Source: www.datapad.io

5 Best Python Libraries For Data Visualization in 2023

Plotly is a web-based data visualization toolkit that comes with unique functionalities such as dendrograms, 3D charts, and also contour plots, which is not very common in other libraries. It has a great API offering scatter plots, line charts, bar charts, error bars, box plots, and other visualizations. Plotly can even be accessed from a Python Notebook.

Source: www.technotification.com

Top 8 Python Libraries for Data Visualization

Plotly is a free open-source graphing library that can be used to form data visualizations. Plotly (plotly.py) is built on top of the Plotly JavaScript library (plotly.js) and can be used to create web-based data visualizations that can be displayed in Jupyter notebooks or web applications using Dash or saved as individual HTML files. Plotly provides more than 40 unique...

Source: www.geeksforgeeks.org

5 top picks for JavaScript chart libraries

Plotly is a graphing library that’s available for various runtime environments, including the browser. It supports many kinds of charts and graphs that we can configure with a variety of options.

Source: blog.logrocket.com

Social recommendations and mentions

Based on our record, Plotly should be more popular than Cytoscape. It has been mentiond 29 times since March 2021. We are tracking product recommendations and mentions on various public social media platforms and blogs. They can help you identify which product is more popular and what people think of it.

Cytoscape mentions (11)

A Canadian payroll dependency chart
Doing a bit more digging, it's using cytoscape[0] which is similar to graphviz. If you search your favorite search engine with "Cytoscape Session Viewer", you'll find many websites displaying the same type of graphs (select layout: circle). FYI, circo doesn't always output a circle. I recently created https://github.com/MegaManSec/SSH-Snake/blob/main/tools/SSH-Snake-dot-circo.png. - Source: Hacker News / 4 months ago
Budō Lineage Tree: a community-driven database and interactive explorer
The YAML files are then parsed, and a CYJS file produced, which is a graph model. This is used directly in the web app, but can also be opened in the Cytoscape desktop app , and imported into Neo4j if desired. I can add additional "export" steps to the automated build process, so e.g. GraphML (yEd, Gephi) or DOT files (GraphViz, mermaid, etc) can be used for whatever purpose needed. Source: 12 months ago
Any advice on a community detection algorithm?
Both Cytoscape and Gephi are options that you can try on Windows; both can run some classic community detection algorithms and can be extended with plugins. Personally, I'd recommend you to use igraph, which can be run as an R or python libraries. Then, about the specific algorithm, I have no experience on amino acid communities, but I would approach the issue thinking the properties that you would like to... Source: over 1 year ago
Lost interactive graph (as in nodes + edges) editing tool
Two common GUI tools for analysis and editing of graph data are Gephi and Cytoscape. An older alternative starting with a P is Pajek, but I've never used it. Source: almost 2 years ago
Gephi – The Open Graph Viz Platform
I've been thinking that Gephi is getting long in the tooth. Has anybody tried Cytoscape? (https://cytoscape.org/) (DNS is SERVFAILing at the moment.) I use it for a combination of "no K" clustering (general exploration) and what's referred to in threat intelligence by the term of art "pivoting". - Source: Hacker News / about 2 years ago

Plotly mentions (29)

Python equivalent to power bi/power query?
For dashboards: - https://plotly.com/ is probably my favourite, but there are others like streamlit, voila and others... Source: 5 months ago
Junior Developer asked to make Saaas in first month.
If your CEO wants you to solo build an alternative to Tableau, PowerBi, or even Plotly then consider him/her delusional. Source: 11 months ago
PSA: You don't need fancy stuff to do good work.
Python's pandas, NumPy, and SciPy libraries offer powerful functionality for data manipulation, while matplotlib, seaborn, and plotly provide versatile tools for creating visualizations. Similarly, in R, you can use dplyr, tidyverse, and data.table for data manipulation, and ggplot2, lattice, and shiny for visualization. These packages enable you to create insightful visualizations and perform statistical analyses... Source: 12 months ago
Wait, but I thought they were the same thing?
I use plotly and like it a lot. It is slower though. Noticeable if you want to batch-generate a bunch of images and dump them into a folder. But that probably isn't the case most times. Source: about 1 year ago
Storing your data in a Plotly Dash data dashboard
Plotly Dash is a great framework for developing interactive data dashboards using Python, R, and Javascript. It works alongside Plotly to bring your beautiful visualizations to the masses. - Source: dev.to / over 1 year ago