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Based on our record, Bookdown seems to be more popular. It has been mentiond 3 times since March 2021. We are tracking product recommendations and mentions on various public social media platforms and blogs. They can help you identify which product is more popular and what people think of it.
Most publications I work with frown on graph titles in preference to captions. If you use Rmarkdown with the bookdown package you can build documents that embed your graphs with captions that you can cross reference in your text. Despite the title, it is great for papers as well as books. https://bookdown.org/home/. Source: over 3 years ago
It’s just that you need to run a Linux server to host a shiny app. You can’t complete to a webpage. But you can use BookDown. https://bookdown.org/home/. Source: over 3 years ago
Just an fyi that these are not mutually exclusive. You can use a custom latex template for the pandoc pdf translation while still using rmarkdown for your actual writing. Details here. Also, for something dissertation length you might want to look into the bookdown package; related. Source: over 3 years ago
GitBook - Modern Publishing, Simply taking your books from ideas to finished, polished books.
Trello - Infinitely flexible. Incredibly easy to use. Great mobile apps. It's free. Trello keeps track of everything, from the big picture to the minute details.
ReadTheDocs - Spend your time on writing high quality documentation, not on the tools to make your documentation work.
Notion - All-in-one workspace. One tool for your whole team. Write, plan, and get organized.
MkDocs - Project documentation with Markdown.
Slack - A messaging app for teams who see through the Earth!