UX Flow Wireframe Prototyping System - Create beautiful user flows prototypes for your next project
Flowkit - Sketch library for user flows/content maps/annotations
draw.io - Online diagramming application
Visual Flows - Simple design process can be here.
yEd - yEd is a free desktop application to quickly create, import, edit, and automatically arrange diagrams. It runs on Windows, Mac OS X, and Unix/Linux.
Flow - Stop managing projects from your inbox.