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SnapGene Viewer - SnapGene offers the fastest and easiest way to plan, visualize, and document DNA cloning and PCR. You can easily annotate features and design primers.
Avogadro - Avogadro is a free, fantastically easy to use molecule editor.
BioEdit - Biological sequence alignment editor
ChemDraw - ChemDraw - The Gold Standard for Chemical Structure Drawing and Research Publications.
DNADynamo - DNA analysis, cloning and sequencing software
ACD/ChemSketch - ACD/ChemSketch for personal and academic use brings the power of our structure drawing package to your home computer.