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pymol - PyMOL is a powerful and comprehensive molecular visualization product for rendering and animating...
UCSF Chimera - UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular...
BioBlender - BioBlender is a software package built on the open-source 3D modeling software ...
Jmol - Jmol is a free, open source molecule viewer for students, educators, and researchers in chemistry...
VMD - Visual Molecular Dynamics - VMD - Visual Molecular Dynamics, molecular graphics software for MacOS X, Unix, and Windows
Avogadro - Avogadro is a free, fantastically easy to use molecule editor.