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Jira - The #1 software development tool used by agile teams. Jira Software is built for every member of your software team to plan, track, and release great software.
Zube - Project management for developers.
Trello - Infinitely flexible. Incredibly easy to use. Great mobile apps. It's free. Trello keeps track of everything, from the big picture to the minute details.
Bee App - This is Bee.
Redmine - Flexible project management web application
Digital Assistant - Issue Manager - Create issue, List issues, Close Issue, Issue Coordination, Issue Analytics, User Perfromance Metrics.