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Qiqqa is by far the strongest solution for research and managing pdf's. Zotero, named as a comparison is weak as it does not allow pdf;s to be loaded into its interface - you need to use a pdf reader, which defeats its whole purpose. With Qiqqa documents in a library can be searched together. It has excellent maps of your libraries. It is not prefect, having a few glitches, but still is the only one of its kind.
FileCenter - Scan & organize documents with our paperless scanning management software. Perfect to organize & manage any kind of file. ✔ Try FileCenter FREE today!
Mendeley - Easily organize your papers, read & annotate your PDFs, collaborate in private or open groups, and securely access your research from everywhere.
Paperless - Developers and publishers of Mac, Win, and iOS productivity, home and office and writing software such as MacGourmet, Paperless, MacJournal and many more. Based in MN.
Zotero - Zotero is a free, easy-to-use tool to help you collect, organize, cite, and share research.
eDoc Organizer - eDoc Organizer is a document management software solution for home and small business users.
JabRef - Graphical Java application for managing bibtex (. bib) databases.JabRef · JabRef Help · JabRef | Blog · OpenOffice/LibreOffice .