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Cytoscape - Cytoscape Official Web Site
Lampyre - Lampyre - an efficient data analysis and OSINT multi-tool for everyone.
Polinode - Polinode is a tool that makes it easy to perform powerful network analysis.
Linkurious - Search and visualize your graph data through a simple web-based interface
Gephi - Gephi is an open-source software for visualizing and analyzing large networks graphs.
Maltego - Maltego is an open source intelligence and forensics application.