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Qiqqa is by far the strongest solution for research and managing pdf's. Zotero, named as a comparison is weak as it does not allow pdf;s to be loaded into its interface - you need to use a pdf reader, which defeats its whole purpose. With Qiqqa documents in a library can be searched together. It has excellent maps of your libraries. It is not prefect, having a few glitches, but still is the only one of its kind.
LiveImpact - LiveImpact Nonprofit Technology that integrates with quickbooks, gmail, google docs and provides donor, donation, volunteer, crm management. Event, donation, social fundraiser, gala events, student tacking, increased engagement and task management
Mendeley - Easily organize your papers, read & annotate your PDFs, collaborate in private or open groups, and securely access your research from everywhere.
The Databank For Nonprofit Organizations - Databank is a nonprofit CRM with solutions in donor management and fundraising.
Zotero - Zotero is a free, easy-to-use tool to help you collect, organize, cite, and share research.
FIMS - FIMS is a fund accounting solution tool that also includes grant management and constituent management modules.
JabRef - Graphical Java application for managing bibtex (. bib) databases.JabRef · JabRef Help · JabRef | Blog · OpenOffice/LibreOffice .