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I actually worked on a project that did this. We used a database called "Tile38" [1] which used an R-Tree to make geospatial queries speedy. It was pretty good. Our dataset was ~150 GiB, I think? All in RAM. Took a while to start the server, as it all came off disk. Could have been faster. (It borrowed Redis's query language, and its storage was just "store the commands the recreate the DB, literally", IIRC. Dead... - Source: Hacker News / over 1 year ago
Redis - Redis is an open source in-memory data structure project implementing a distributed, in-memory key-value database with optional durability.
VoltDB - In-memory relational DBMS capable of supporting millions of database operations per second
NeDB - The JavaScript Database, for Node.js, nw.js, electron and the browser - louischatriot/nedb
SQLite - SQLite Home Page
Aerospike - Aerospike is a high-performing NoSQL database supporting high transaction volumes with low latency.
MongoDB - MongoDB (from "humongous") is a scalable, high-performance NoSQL database.