Based on our record, Icy should be more popular than Jmol. It has been mentiond 2 times since March 2021. We are tracking product recommendations and mentions on various public social media platforms and blogs. They can help you identify which product is more popular and what people think of it.
Mercury's functions are great and numerous, the program sadly became a bit resource hungry (better to spend 8 than 4GB of RAM, about 700+MB on the hard disk for a permanent installation. In this perspective, it is nice Jmol equally can be used to display/highlight symmetry relationships in crystals (link to an animated .gif) for less than 70MB when using Jmol's console. Source: about 1 year ago
ICY is an open source free software, you can download for PC, MAC and Linux here. Source: over 2 years ago
For all my image processing I use Icy (http://icy.bioimageanalysis.org/) it doesn't seem to be that well known but it is free, has imageJ built into it, and I find it much easier and quicker than imageJ. It is really handy for z-stacks too, you can convert them to nice 3D images which I imagine might complement your mitochondrial shape data nicely. You can also download plug-ins for it that are quantification... Source: about 3 years ago
pymol - PyMOL is a powerful and comprehensive molecular visualization product for rendering and animating...
ImageJ - and Other Health Care
Avogadro - Avogadro is a free, fantastically easy to use molecule editor.
Fiji - Fiji: A batteries-included distribution of ImageJ.
UCSF Chimera - UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular...
Image Pro - Used by researchers worldwide, Image-Pro Plus image processing software makes it easy to acquire images, count, measure and classify objects, and automate work.