DNADynamo
SnapGene Viewer
BioEdit
UGENE
Geneious
Benchling
Chromas
Genophore
Avogadro
ChemDraw
ACD/ChemSketch
ChemDoodle
Gnome Chemistry Utils
pymol
BKchem
Jmol
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There are several DNA analysis apps. But most of them are subscription-based. DNADynamo is a static license app. It means that once you purchase a license, you get full support for these licenses, including future updates. We have five licenses in my lab, and I can easily transfer the licence on the computer of the finished student to the one who has just started. The interface is improving with every update, and I can say I love the app!
SnapGene Viewer - SnapGene offers the fastest and easiest way to plan, visualize, and document DNA cloning and PCR. You can easily annotate features and design primers.
ChemDraw - ChemDraw - The Gold Standard for Chemical Structure Drawing and Research Publications.
BioEdit - Biological sequence alignment editor
ACD/ChemSketch - ACD/ChemSketch for personal and academic use brings the power of our structure drawing package to your home computer.
UGENE - UGENE is free open-source cross-platform bioinformatics software
ChemDoodle - Chemical drawing and publishing software for desktop, web and mobile. Affordable and used by thousands of scientists around the world. Free trial available for immediate download.