Software Alternatives & Reviews

Cytoscape VS yEd Graph Editor

Compare Cytoscape VS yEd Graph Editor and see what are their differences

Cytoscape Official Web Site

yEd is a free desktop application to quickly create, import, edit, and automatically arrange diagrams. It runs on Windows, Mac OS X, and Unix/Linux.
Cytoscape Landing Page
Cytoscape Landing Page
yEd Graph Editor Landing Page
yEd Graph Editor Landing Page

Cytoscape details

Diagrams Graph Visualization Data Visualization

yEd Graph Editor details

Diagrams Prototyping Wireframing

Cytoscape videos

Cytoscape Tutorial- Beginners Guide in Jupyter

More videos:

  • - MetScape App for Cytoscape: Creating and Viewing Correlation Networks
  • - Download a Sequence Similarity Network from the EFI, import it into Cytoscape and apply a layout

yEd Graph Editor videos

yEd Graph Editor in 90 seconds

More videos:

  • - yED Graph Editor Tutorial - Make flowcharts, trees, graph Freeware.

Category Popularity

0-100% (relative to Cytoscape and yEd Graph Editor)


These are some of the external sources and on-site user reviews we've used to compare Cytoscape and yEd Graph Editor

Cytoscape Reviews

We have no reviews of Cytoscape yet.
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yEd Graph Editor Reviews

Best 7 Free Online XMind Alternatives for Windows
Another excellent tool that you can use for common and complex visual illustration is yEd. This aims to help users in terms of creating diagrams like UML, flowcharts, network diagram, org chart, and other process illustrations. With this XMind free alternative, you will find every icon and symbol you need for the aforementioned diagrams. On the other hand, users are...
40 Open Source, Free and Top Unified Modeling Language (UML) Tools
yEd is a desktop application that can be used to quickly and effectively generate high-quality diagrams. Users can create diagrams manually, or import their external data for analysis. yEd’s automatic layout algorithms arranges even large data sets with just the press of a button. yEd is freely available and runs on all major platforms: Windows, Unix/Linux, and Mac OS X.With...

Social recommendations and mentions

Based on our record, Cytoscape seems to be more popular. It has been mentiond 4 times since March 2021. We are tracking product recommendations and mentions on Reddit, HackerNews and some other platforms. They can help you identify which product is more popular and what people think of it.

Cytoscape mentions (4)

  • I built an interactive map for self-teaching online. It's like a skill tree for learning
    Also if you don't need to embed it in a webpage you can just use cytoscape. - Source: Reddit / about 2 months ago
  • Tool for creating graphs with using graphical user interface?
    What about this one? - Source: Reddit / 5 months ago
  • Cytoscape vs PathVisio: what is the differences?
    Hi! I'm looking for software that can map biological pathways and from several posts I found on ReasearchGate and Biostars, it seems like Cytoscape and PathVisio are the major players here. So I want to know what is the differences and which might be better for my need. PathVisio claimed that these are very different programs and it also mentioned that "PathVisio sees pathways as drawings, not as graphs. This... - Source: Reddit / 6 months ago

yEd Graph Editor mentions (0)

We have not tracked any mentions of yEd Graph Editor yet. Tracking of yEd Graph Editor recommendations started around Mar 2021.

What are some alternatives?

When comparing Cytoscape and yEd Graph Editor, you can also consider the following products

Gephi - Gephi is an open-source software for visualizing and analyzing large networks graphs.

LucidChart - LucidChart is the missing link in online productivity suites. LucidChart allows users to create, collaborate on, and publish attractive flowcharts and other diagrams from a web browser.

KeyLines - The JavaScript toolkit for graph visualization - Online diagramming application

Linkurious - Search and visualize your graph data through a simple web-based interface

PlantUML - PlantUML is an open-source tool that uses simple textual descriptions to draw UML diagrams.

User reviews

Share your experience with using Cytoscape and yEd Graph Editor. For example, how are they different and which one is better?

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