Cytoscape VS Linkurious

Compare Cytoscape VS Linkurious and see what are their differences

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Linkurious

Search and visualize your graph data through a simple web-based interface

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2021-07-29

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2023-04-25

Cytoscape features and specs

Open-source
Cytoscape is open-source software, making it freely accessible for users to download, use, and modify according to their needs. This encourages a community-driven approach to development and problem-solving.
Extensive Plugin Support
Cytoscape offers a vast library of plugins for extending its functionality. This adaptability allows users to tailor the tool to meet specific research or enterprise requirements, enhancing its versatility.
Comprehensive Visualization
It provides strong network visualization capabilities, allowing users to effectively analyze complex biological or general networks with intuitive graphical representations.
Integration Capabilities
Cytoscape can be integrated with other tools and data formats, enhancing its utility in various workflows and allowing seamless incorporation into existing data analysis pipelines.
Community and Documentation
The software has an active community and extensive documentation, making it easier for new users to get support and learn how to maximize its features.

Possible disadvantages of Cytoscape

Performance Limitations
Cytoscape may face performance issues when handling very large datasets or networks, which can result in slow processing speeds and potential crashes.
Complexity for Beginners
The software's wide array of features and plugins can be overwhelming to new users, potentially requiring a steep learning curve to effectively use all available functionalities.
Limited Collaborative Features
Cytoscape primarily focuses on individual use, and lacks advanced collaborative features that are useful for teams working on the same project in real-time.
Dependency Management
Managing dependencies for plugins and updates can sometimes be challenging, leading to potential compatibility issues between different versions of Cytoscape and its plugins.

Linkurious features and specs

User-Friendly Interface
Linkurious provides an intuitive and easy-to-use interface, making it accessible for users with varying levels of technical expertise.
Powerful Visualization
It offers robust graph visualization capabilities, allowing users to easily explore and understand complex network data.
Rich Features
Linkurious includes a wide range of features such as advanced search, filters, alerts, and collaborative tools, enhancing the user experience.
Integration
It integrates well with popular graph databases like Neo4j, facilitating seamless data analysis and operations.
Security
Linkurious incorporates strong security measures, including user authentication and access control, ensuring data privacy and integrity.

Possible disadvantages of Linkurious

Cost
Linkurious can be relatively expensive, especially for small organizations or individual users.
Learning Curve
While the interface is generally user-friendly, there can be a learning curve for users who are new to graph databases and network analysis.
Performance
For extremely large datasets, users might experience performance issues, such as slower loading times and lag during interactions.
Limited to Supported Databases
Linkurious is primarily designed to work with certain graph databases like Neo4j, which can limit its use with other database technologies.
Dependency on Subscription
Continuous access to its features relies on a subscription model, which might be restrictive for organizations looking for one-time payment solutions.

Analysis of Linkurious

Overall verdict

Linkurious is considered a highly effective tool for those needing to parse through and understand graph data. Its user-friendly interface and powerful visualization capabilities make it a top choice for businesses and individuals looking to derive insights from complex relationships within their data.

Why this product is good

Linkurious is good because it offers a powerful and intuitive platform for visualizing and analyzing complex graph data. It is particularly praised for its ease of use, robust feature set, and ability to handle large datasets efficiently. The platform supports a wide variety of data sources and provides a rich interface for users to explore and make sense of their data. Linkurious is also equipped with security features and collaboration tools that are beneficial in a team environment.

Recommended for

Data analysts and scientists seeking to uncover insights from complex datasets
Businesses requiring real-time data analysis and visualization for fraud detection, cybersecurity, or risk management
Research institutions and academic bodies exploring connections within scientific or social datasets
Developers needing a robust graph visualization tool that supports various data sources

Cytoscape videos

+ Add

Cytoscape Tutorial- Beginners Guide in Jupyter

Linkurious videos

+ Add

Linkurious Enterprise Tutorial - Reviewing Alert Matches

Category Popularity

0-100% (relative to Cytoscape and Linkurious)

Linkurious

Diagrams

58 58%

Diagrams

42% 42

Flowcharts

68 68%

Flowcharts

32% 32

Data Visualization

56 56%

Data Visualization

44% 44

Network & Admin

100 100%

Network & Admin

0% 0

User comments

Share your experience with using Cytoscape and Linkurious. For example, how are they different and which one is better?

Social recommendations and mentions

Based on our record, Cytoscape should be more popular than Linkurious. It has been mentiond 11 times since March 2021. We are tracking product recommendations and mentions on various public social media platforms and blogs. They can help you identify which product is more popular and what people think of it.

Cytoscape mentions (11)

A Canadian payroll dependency chart
Doing a bit more digging, it's using cytoscape[0] which is similar to graphviz. If you search your favorite search engine with "Cytoscape Session Viewer", you'll find many websites displaying the same type of graphs (select layout: circle). FYI, circo doesn't always output a circle. I recently created https://github.com/MegaManSec/SSH-Snake/blob/main/tools/SSH-Snake-dot-circo.png. - Source: Hacker News / over 1 year ago
Budō Lineage Tree: a community-driven database and interactive explorer
The YAML files are then parsed, and a CYJS file produced, which is a graph model. This is used directly in the web app, but can also be opened in the Cytoscape desktop app , and imported into Neo4j if desired. I can add additional "export" steps to the automated build process, so e.g. GraphML (yEd, Gephi) or DOT files (GraphViz, mermaid, etc) can be used for whatever purpose needed. Source: about 2 years ago
Any advice on a community detection algorithm?
Both Cytoscape and Gephi are options that you can try on Windows; both can run some classic community detection algorithms and can be extended with plugins. Personally, I'd recommend you to use igraph, which can be run as an R or python libraries. Then, about the specific algorithm, I have no experience on amino acid communities, but I would approach the issue thinking the properties that you would like to... Source: over 2 years ago
Lost interactive graph (as in nodes + edges) editing tool
Two common GUI tools for analysis and editing of graph data are Gephi and Cytoscape. An older alternative starting with a P is Pajek, but I've never used it. Source: almost 3 years ago
Gephi – The Open Graph Viz Platform
I've been thinking that Gephi is getting long in the tooth. Has anybody tried Cytoscape? (https://cytoscape.org/) (DNS is SERVFAILing at the moment.) I use it for a combination of "no K" clustering (general exploration) and what's referred to in threat intelligence by the term of art "pivoting". - Source: Hacker News / about 3 years ago

Linkurious mentions (2)

Ask HN: Who is hiring? (March 2025)
Linkurious | Backend and DevOps engineer | Full-Time | ONSITE (Paris, France) | EUR 60k-70k | https://linkurious.com TL;DR: we’re the European competitor to Palantir. We build and deploy our data intelligence platform in the World’s biggest organisations (governments, financial institutions, NGOs, industry groups, etc.). Tech: we are centered on graph visualization with a swappable graph database backend (neo4j,... - Source: Hacker News / 3 months ago
Ask HN: Who is hiring? (February 2024)
Https://linkurious.com | USA (East coast) | REMOTE | Full-time | $150k-180k We are a graph visualization company specializing in data investigations. Most of our customers are fighting financial crime. We are a 11 years old bootstrapped French startup, we created a subsidiary in Washington DC 2 year ago to better serve the US market. We are looking for employee #2 in the US (#44 overall). The open position is a... - Source: Hacker News / over 1 year ago