Cytoscape VS Dia

Cytoscape Reviews

Dia Reviews

Cytoscape mentions (11)

• A Canadian payroll dependency chart

  Doing a bit more digging, it's using cytoscape[0] which is similar to graphviz. If you search your favorite search engine with "Cytoscape Session Viewer", you'll find many websites displaying the same type of graphs (select layout: circle). FYI, circo doesn't always output a circle. I recently created https://github.com/MegaManSec/SSH-Snake/blob/main/tools/SSH-Snake-dot-circo.png. - Source: Hacker News / 4 months ago

• Budō Lineage Tree: a community-driven database and interactive explorer

  The YAML files are then parsed, and a CYJS file produced, which is a graph model. This is used directly in the web app, but can also be opened in the Cytoscape desktop app , and imported into Neo4j if desired. I can add additional "export" steps to the automated build process, so e.g. GraphML (yEd, Gephi) or DOT files (GraphViz, mermaid, etc) can be used for whatever purpose needed. Source: 12 months ago

• Any advice on a community detection algorithm?

  Both Cytoscape and Gephi are options that you can try on Windows; both can run some classic community detection algorithms and can be extended with plugins. Personally, I'd recommend you to use igraph, which can be run as an R or python libraries. Then, about the specific algorithm, I have no experience on amino acid communities, but I would approach the issue thinking the properties that you would like to... Source: over 1 year ago

• Lost interactive graph (as in nodes + edges) editing tool

  Two common GUI tools for analysis and editing of graph data are Gephi and Cytoscape. An older alternative starting with a P is Pajek, but I've never used it. Source: almost 2 years ago

• Gephi – The Open Graph Viz Platform

  I've been thinking that Gephi is getting long in the tooth. Has anybody tried Cytoscape? (https://cytoscape.org/) (DNS is SERVFAILing at the moment.) I use it for a combination of "no K" clustering (general exploration) and what's referred to in threat intelligence by the term of art "pivoting". - Source: Hacker News / about 2 years ago

Dia mentions (11)

• Tools for documenting solar and power system changes for permits

  I used GIMP (https://www.gimp.org) and Dia Diagram Editor (http://dia-installer.de) I can't say I was very happy with either for what I was doing (laying out mount points for solar panels) FreeCAD (https://www.freecad.org) looks like a good option as does Inkscape but I believe it has a high learning curve. I am also playing around with Open Solar's online tool (https://app.opensolar.com). Source: 11 months ago

• Program to write measures, and the shape is drawn with proper size

  Perhaps the old Dia (works on W10). There's a portable version on Portableapps.com. Source: 12 months ago

• Your choices for a MS Visio alternative to draw system diagrams

  Its a bit old and pretty simple, but I use Dia frequently. Source: about 1 year ago

• Did not realize there was another physics sub.

  Dia Diagram Editor for simple schematics and flowchart type diagrams for something very quick and easy to pick up in five minutes, and. Source: about 1 year ago

• Things to do next and how to secure my network.

  Project 1: Use the open source UML diagrammer, DIA (link) to make a readable network map :). Source: over 1 year ago