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open3mod - A free, Open-Source 3D Viewer designed to make it all easier. Massive 3D Format support
pymol - PyMOL is a powerful and comprehensive molecular visualization product for rendering and animating...
MeshLab - System for processing and editing 3D triangular meshes, provides a set of tools for editing...
VMD - Visual Molecular Dynamics - VMD - Visual Molecular Dynamics, molecular graphics software for MacOS X, Unix, and Windows
noesis - Rich Whitehouse's project web site.
UCSF Chimera - UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular...